Skip to content

Pull requests: scverse/anndata

New pull request New
69 Open 1,437 Closed
69 Open 1,437 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Removed scheduler from da.store as this works regardless of scheduler
#2376 opened Mar 25, 2026 by joshua-gould Loading…
1
feat: AnnData.can_write based on AnnData.reduce + refactored AnnData.__sizeof__ skip-gpu-ci
#2372 opened Mar 19, 2026 by ilan-gold Loading…
1 of 5 tasks
0.13.0
14
chore: upgrade to zarr v3 sharding default skip-gpu-ci
#2368 opened Mar 18, 2026 by ilan-gold • Draft
3 tasks
0.13.0
1
Enable write to existing zarr store
#2366 opened Mar 16, 2026 by joshua-gould Loading…
2
Replace use_cuda with device parameter in AnnLoader
#2360 opened Mar 9, 2026 by LiudengZhang Loading…
4 tasks done
7
feat: "backed" mode for read_lazy
#2357 opened Feb 27, 2026 by ilan-gold • Draft
8 tasks
1
1
feat: mlx compat
#2334 opened Feb 6, 2026 by ilan-gold • Draft
5 tasks
0.13.0
1
feat: DataFrame API for custom obs and var skip-gpu-ci
#2328 opened Feb 4, 2026 by ilan-gold • Draft
2 of 8 tasks
0.13.0
2
5
perf: use zarrs if available for full read skip-gpu-ci
#2326 opened Feb 3, 2026 by ilan-gold • Draft
3 tasks
0.13.0
13
feat: add LazyCategoricalDtype for lazy categorical columns
#2288 opened Jan 8, 2026 by katosh Loading…
3 tasks done
1
41
feat: allow reading nullable arrays without mask on disk
#2279 opened Jan 5, 2026 by flying-sheep • Draft
3 tasks
0.13.0
1
chore: upgrade to cupy-cuda13
#2269 opened Dec 30, 2025 by ilan-gold Loading…
3 tasks
0.13.0
1
chore(deps): bump actions/cache from 4 to 5 no milestone skip-gpu-ci
#2251 opened Dec 15, 2025 by dependabot bot Loading…
1
feat: Add HTML representation
#2236 opened Nov 29, 2025 by katosh Loading…
2 of 3 tasks
0.13.0
1
35
chore: add type annotation
#2229 opened Nov 19, 2025 by szabgab Loading…
1
ci: use codecov flags
#2217 opened Nov 11, 2025 by flying-sheep • Draft 0.12.11
1
Pa/name-conventions
#2208 opened Nov 6, 2025 by flying-sheep • Draft
3 tasks
1
feat: create parent dirs when writing into h5ad
#2186 opened Oct 30, 2025 by marcfranquesa Loading…
3
Add type-checking
#2174 opened Oct 25, 2025 by szabgab Loading…
3 tasks done
19
Add batch_converter hook + multiprocessing support to experimental.pytorch.AnnLoader
#2135 opened Sep 29, 2025 by ronamit Loading…
fix: allow categorical index in read_lazy skip-gpu-ci
#2062 opened Jul 29, 2025 by ilan-gold Loading…
3 tasks
0.12.11
4
feat: Usage of H5py Virtual Datasets for concat_on_disk skip-gpu-ci
#2032 opened Jul 17, 2025 by selmanozleyen Loading…
3 tasks done
0.12.11
@selmanozleyen
13
Improve concat_on_disk varm handling
#2003 opened Jun 3, 2025 by amalia-k510 • Draft
@ilan-gold @amalia-k510
Add adapt_vars_like to align .var between AnnData objects (issue #1697) skip-gpu-ci
#1986 opened May 14, 2025 by amalia-k510 Loading… 0.13.0
32
Switch to (testing.)fast-array-utils dev process
#1921 opened Mar 17, 2025 by flying-sheep • Draft
3 tasks
0.12.11
6
ProTip! no:milestone will show everything without a milestone.