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[chore] 死代码与重复实现清理（manifest-compiler / doc-graph-extractor / utils 垫片 / legacy hook 子命令等）
enhancementNew feature or requestNew feature or requestStatus: Open.#86 In Tencent/teamai-cli;[bug] project/user scope 隔离不完整：recall 仍双 scope、auto-recall upvote 落 user、hooks inject 与 pull manifest 不一致
bugSomething isn't workingSomething isn't workingStatus: Open.#85 In Tencent/teamai-cli;[bug] codebase 图谱检索多处缺陷（不递归/camelCase 失效/全局图被覆盖/tokenizer 不一致）
bugSomething isn't workingSomething isn't workingStatus: Open.#84 In Tencent/teamai-cli;[bug] search-index 收缩保护导致已删除文档残留在检索结果中
bugSomething isn't workingSomething isn't workingStatus: Open.#83 In Tencent/teamai-cli;[bug] knowledge-reconciler buildConfidence 取平均导致置信度反常 + stale 检测语义错误
bugSomething isn't workingSomething isn't workingStatus: Open.#82 In Tencent/teamai-cli;[bug] recall 的 codebase 检索硬编码 cwd/teamwiki，与 pull/团队仓路径冲突
bugSomething isn't workingSomething isn't workingStatus: Open.#81 In Tencent/teamai-cli;[bug] recall 中 codebase 结果 min-max 归一化导致得分恒为 10，挤占 learnings
bugSomething isn't workingSomething isn't workingStatus: Open.#80 In Tencent/teamai-cli;[bug] recall --depth 参数完全无效，且 depth budget 顺序写反、lookup 非图遍历
bugSomething isn't workingSomething isn't workingStatus: Open.#79 In Tencent/teamai-cli;- Status: Open.#17 In Tencent/teamai-cli;